NRRD - Revision history

Flux: fix spacing and typo in "team"

2013-10-30T07:52:05Z

fix spacing and typo in "team"

Npolys: /* NRRD for Volume Visualization */

2013-09-05T16:55:04Z

‎NRRD for Volume Visualization

Brutzman: /* Possibilities for Future Work */

2013-09-05T16:54:53Z

‎Possibilities for Future Work

Brutzman: /* Possibilities for Future Work */

2013-09-05T16:54:19Z

‎Possibilities for Future Work

Brutzman: /* Possibilities for Future Work */ Stanford volume data archive

2013-09-05T16:53:30Z

‎Possibilities for Future Work: Stanford volume data archive

Brutzman: /* Possibilities for Future Work */ example formats

2013-09-05T16:52:02Z

‎Possibilities for Future Work: example formats

Npolys: /* NRRD for Volume Visualization */

2013-09-05T16:51:32Z

‎NRRD for Volume Visualization

Npolys: /* NRRD for Volume Visualization */

2013-09-05T16:50:50Z

‎NRRD for Volume Visualization

Npolys: /* NRRD for Volume Visualization */

2013-09-05T16:49:06Z

‎NRRD for Volume Visualization

Brutzman: /* Possibilities for Future Work */ initial details

2013-09-05T16:45:11Z

‎Possibilities for Future Work: initial details

@@ Line 5: / Line 5: @@
 The [http://teem.sourceforge.net/nrrd NRRD] website includes extensive details, examples, conversion utilities, resources, and references.
-NRRD and the corresponding '''teem''' software library facilitates the pre-processing tasks (cropping, quantizing, resampling) of volume data.  It also helps with the basic analysis tasks which help to understand the structure of a dataset (histograms, maximum intensity projections, connected components).
+NRRD and the corresponding '''team''' software library facilitates the pre-processing tasks (cropping, quantizing, resampling) of volume data. It also helps with the basic analysis tasks which help to understand the structure of a dataset (histograms, maximum intensity projections, connected components).
 In addition to the teem library and codebase, several important tools support the processing and use of NRRD volume data format as well as DICOM:
@@ Line 13: / Line 13: @@
 * [http://slicer.org/ Slicer]
-The [http://www.web3d.org/files/specifications/19775-1/V3.3/Part01/components/volume.html X3D Volume Rendering component] defines how to describe the presentation of volumetric data in interactive 3D scenes.  These capabilities were approved in X3D version 3.3.  Support for the NRRD format is optional for X3D players. For more details on processing pipelines, see the [http://metagrid2.sv.vt.edu/~npolys/Web3D2013/Med_Vol_Tutorial_Web3D2013_Merged.pdf Web3D 2013 Tutorial]!
+The [http://www.web3d.org/files/specifications/19775-1/V3.3/Part01/components/volume.html X3D Volume Rendering component] defines how to describe the presentation of volumetric data in interactive 3D scenes. These capabilities were approved in X3D version 3.3. Support for the NRRD format is optional for X3D players. For more details on processing pipelines, see the [http://metagrid2.sv.vt.edu/~npolys/Web3D2013/Med_Vol_Tutorial_Web3D2013_Merged.pdf Web3D 2013 Tutorial]!
-The [http://www.web3d.org/x3d/content/examples/Basic/VolumeRendering/ X3D Basic Examples - Volume Visualization] provides example X3D scenes utilizing NRRD.  These scenes have been prepared by the [https://snoid.sv.vt.edu/visionarium/ Virginia Tech (VT) Visual Computing Group] research group and published under an open-source license.
+The [http://www.web3d.org/x3d/content/examples/Basic/VolumeRendering/ X3D Basic Examples - Volume Visualization] provides example X3D scenes utilizing NRRD. These scenes have been prepared by the [https://snoid.sv.vt.edu/visionarium/ Virginia Tech (VT) Visual Computing Group] research group and published under an open-source license.
 === Possibilities for Future Work ===

@@ Line 13: / Line 13: @@
 * [http://slicer.org/ Slicer]
-The [http://www.web3d.org/files/specifications/19775-1/V3.3/Part01/components/volume.html X3D Volume Rendering component] defines how to describe the presentation of volumetric data in interactive 3D scenes.  These capabilities were approved in X3D version 3.3.  Support for the NRRD format is optional for X3D players. For more details on processing pipelines, see the Web3D 2013 Tutorial!
+The [http://www.web3d.org/files/specifications/19775-1/V3.3/Part01/components/volume.html X3D Volume Rendering component] defines how to describe the presentation of volumetric data in interactive 3D scenes.  These capabilities were approved in X3D version 3.3.  Support for the NRRD format is optional for X3D players. For more details on processing pipelines, see the [http://metagrid2.sv.vt.edu/~npolys/Web3D2013/Med_Vol_Tutorial_Web3D2013_Merged.pdf Web3D 2013 Tutorial]!
-The [http://www.web3d.org/x3d/content/examples/Basic/VolumeRendering/ X3D Basic Examples - Volume Visualization] provides example X3D scenes utilizing NRRD.  These scenes have been prepared by [https://snoid.sv.vt.edu/medical/X3DVolumes Virginia Tech (VT) Visionarium] research group and published under an open-source license.
+The [http://www.web3d.org/x3d/content/examples/Basic/VolumeRendering/ X3D Basic Examples - Volume Visualization] provides example X3D scenes utilizing NRRD.  These scenes have been prepared by the [https://snoid.sv.vt.edu/visionarium/ Virginia Tech (VT) Visual Computing Group] research group and published under an open-source license.
 === Possibilities for Future Work ===

@@ Line 29: / Line 29: @@
 ** [http://www-graphics.stanford.edu/data/voldata Stanford volume data archive]
 ** Perhaps conventions for using TIFF to consistently record image slices
-* Consider suitability of NRRD to be part of a collection of standards (DICOM, X3D, NRRD, others) for archival medical records
+* Consider suitability of NRRD to be added as part of a collection of standards (DICOM, X3D, others) for archival medical records
 * Assess whether NRRD maturity is sufficient to initiate standardization efforts by [http://www.web3D.org Web3D Consortium] for the [http://www.iso.org International Organization for Standardization (ISO)]

@@ Line 28: / Line 28: @@
 ** [http://lcni.uoregon.edu/~dow/Space_software/Space_documentation/File_format_specification.html Space Volume] native file format specification by Space Software
 ** [http://www-graphics.stanford.edu/data/voldata Stanford volume data archive]
 * Consider suitability of NRRD to be part of a collection of standards (DICOM, X3D, NRRD, others) for archival medical records
 * Assess whether NRRD maturity is sufficient to initiate standardization efforts by [http://www.web3D.org Web3D Consortium] for the [http://www.iso.org International Organization for Standardization (ISO)]

@@ Line 27: / Line 27: @@
 ** [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2954506/ Uvf - Unified Volume Format]
 ** [http://lcni.uoregon.edu/~dow/Space_software/Space_documentation/File_format_specification.html Space Volume] native file format specification by Space Software
 * Consider suitability of NRRD to be part of a collection of standards (DICOM, X3D, NRRD, others) for archival medical records
 * Assess whether NRRD maturity is sufficient to initiate standardization efforts by [http://www.web3D.org Web3D Consortium] for the [http://www.iso.org International Organization for Standardization (ISO)]

@@ Line 22: / Line 22: @@
 * Outreach to NRRD community regarding relevant X3D capabilities and collaboration opportunities
 * Continue evaluation of whether other volume formats with similar capabilities are available
 * Consider suitability of NRRD to be part of a collection of standards (DICOM, X3D, NRRD, others) for archival medical records
 * Assess whether NRRD maturity is sufficient to initiate standardization efforts by [http://www.web3D.org Web3D Consortium] for the [http://www.iso.org International Organization for Standardization (ISO)]

@@ Line 8: / Line 8: @@
 In addition to the teem library and codebase, several important tools support the processing and use of NRRD volume data format as well as DICOM:
-* [https://snoid.sv.vt.edu/svnroot/repos/projects/design_structures/ ImageJ]
+* [http://rsbweb.nih.gov/ij/ ImageJ]
 * [http://www.sci.utah.edu/cibc-software/seg3d.html Seg3D]
 * [http://www.itksnap.org/pmwiki/pmwiki.php ITKSnap]

← Older revision		Revision as of 16:49, 5 September 2013
Line 6:		Line 6:

	NRRD and the corresponding '''teem''' software library facilitates the pre-processing tasks (cropping, quantizing, resampling) of volume data. It also helps with the basic analysis tasks which help to understand the structure of a dataset (histograms, maximum intensity projections, connected components).		NRRD and the corresponding '''teem''' software library facilitates the pre-processing tasks (cropping, quantizing, resampling) of volume data. It also helps with the basic analysis tasks which help to understand the structure of a dataset (histograms, maximum intensity projections, connected components).
		+
		+	In addition to the teem library and codebase, several important tools support the processing and use of NRRD volume data format as well as DICOM:
		+	* [https://snoid.sv.vt.edu/svnroot/repos/projects/design_structures/ ImageJ]
		+	* [http://www.sci.utah.edu/cibc-software/seg3d.html Seg3D]
		+	* [http://www.itksnap.org/pmwiki/pmwiki.php ITKSnap]
		+	* [http://slicer.org/ Slicer]

	The [http://www.web3d.org/files/specifications/19775-1/V3.3/Part01/components/volume.html X3D Volume Rendering component] defines how to describe the presentation of volumetric data in interactive 3D scenes. These capabilities were approved in X3D version 3.3. Support for the NRRD format is optional for X3D players.		The [http://www.web3d.org/files/specifications/19775-1/V3.3/Part01/components/volume.html X3D Volume Rendering component] defines how to describe the presentation of volumetric data in interactive 3D scenes. These capabilities were approved in X3D version 3.3. Support for the NRRD format is optional for X3D players.

← Older revision		Revision as of 16:45, 5 September 2013
Line 12:		Line 12:

	=== Possibilities for Future Work ===		=== Possibilities for Future Work ===
		+
		+	* Continue exercising improving tool-chain support and options for creating and integrating volume data in X3D scenes
		+	* Outreach to NRRD community regarding relevant X3D capabilities and collaboration opportunities
		+	* Continue evaluation of whether other volume formats with similar capabilities are available
		+	* Consider suitability of NRRD to be part of a collection of standards (DICOM, X3D, NRRD, others) for archival medical records
		+	* Assess whether NRRD maturity is sufficient to initiate standardization efforts by [http://www.web3D.org Web3D Consortium] for the [http://www.iso.org International Organization for Standardization (ISO)]